From 69a1e1c4407ab816b90d346a1f8c0312255c74e3 Mon Sep 17 00:00:00 2001
From: Nathan Nguyen <159226326+Indigo5684@users.noreply.github.com>
Date: Tue, 18 Feb 2025 09:15:13 -0600
Subject: [PATCH] Modern Lab Fixes

---
 .../modern-phys-lab/counting/100-1.csv        | 2098 ++++++++---------
 .../modern-phys-lab/counting/100-2.csv        | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/200.csv  | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/40-1.csv | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/40-2.csv | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/40-3.csv | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/40-4.csv | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/40-5.csv | 2098 ++++++++---------
 .../physics/modern-phys-lab/counting/run.py   |   45 +-
 .../physics/modern-phys-lab/diffraction.py    |    8 +-
 10 files changed, 8436 insertions(+), 8401 deletions(-)

diff --git a/statics/physics/modern-phys-lab/counting/100-1.csv b/statics/physics/modern-phys-lab/counting/100-1.csv
index f967163..1d5b524 100644
--- a/statics/physics/modern-phys-lab/counting/100-1.csv
+++ b/statics/physics/modern-phys-lab/counting/100-1.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
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-Comments:
-Acquisition Mode:,MCS Internal
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-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:04:02
-End Time:,February 17, 2025, 03:05:44
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,377,5,0,36
-2,96,206,13639,-348,3,150
-3,299,300,271,6,0,299
-
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+Lower Discriminator:,591
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+Elapsed Live Time:,0.0
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+End Time:,February 17, 2025, 03:05:44
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
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diff --git a/statics/physics/modern-phys-lab/counting/100-2.csv b/statics/physics/modern-phys-lab/counting/100-2.csv
index 2bb1c8d..633650c 100644
--- a/statics/physics/modern-phys-lab/counting/100-2.csv
+++ b/statics/physics/modern-phys-lab/counting/100-2.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:05:56
-End Time:,February 17, 2025, 03:07:39
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,365,-1,0,37
-2,96,206,13550,-548,4,151
-3,299,300,237,-6,0,299
-
-Channel Data:
-Channel,Energy,Counts
-0,,95
-1,,132
-2,,106
-3,,135
-4,,121
-5,,126
-6,,137
-7,,135
-8,,107
-9,,118
-10,,119
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-13,,127
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+Spectrum Name:
+Description:
+Student ID:
+Detector Used:
+Comments:
+Acquisition Mode:,MCS Internal
+High Voltage:,650
+Conversion Gain:,1024
+Coarse Gain:,1
+Fine Gain:,1.73
+Upper Discriminator:,731
+Lower Discriminator:,591
+Calibration Coefficients:Elapsed Real Time:,0.0
+Elapsed Live Time:,0.0
+Start Time:,February 17, 2025, 03:05:56
+End Time:,February 17, 2025, 03:07:39
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
+
+1,36,38,365,-1,0,37
+2,96,206,13550,-548,4,151
+3,299,300,237,-6,0,299
+
+Channel Data:
+Channel,Energy,Counts
+0,,95
+1,,132
+2,,106
+3,,135
+4,,121
+5,,126
+6,,137
+7,,135
+8,,107
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diff --git a/statics/physics/modern-phys-lab/counting/200.csv b/statics/physics/modern-phys-lab/counting/200.csv
index cc7c50b..7edae50 100644
--- a/statics/physics/modern-phys-lab/counting/200.csv
+++ b/statics/physics/modern-phys-lab/counting/200.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 02:59:58
-End Time:,February 17, 2025, 03:03:22
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,731,22,0,37
-2,96,206,27295,483,3,150
-3,299,300,505,1,0,299
-
-Channel Data:
-Channel,Energy,Counts
-0,,226
-1,,272
-2,,246
-3,,250
-4,,235
-5,,262
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-8,,212
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-10,,230
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+Upper Discriminator:,731
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+End Time:,February 17, 2025, 03:03:22
+ROIs:
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diff --git a/statics/physics/modern-phys-lab/counting/40-1.csv b/statics/physics/modern-phys-lab/counting/40-1.csv
index d741ced..62ef20b 100644
--- a/statics/physics/modern-phys-lab/counting/40-1.csv
+++ b/statics/physics/modern-phys-lab/counting/40-1.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:07:58
-End Time:,February 17, 2025, 03:08:39
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,154,12,0,37
-2,96,206,5345,238,2,150
-3,299,300,104,1,0,299
-
-Channel Data:
-Channel,Energy,Counts
-0,,54
-1,,50
-2,,62
-3,,49
-4,,34
-5,,46
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-8,,61
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-13,,45
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-15,,57
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-17,,49
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+Spectrum Name:
+Description:
+Student ID:
+Detector Used:
+Comments:
+Acquisition Mode:,MCS Internal
+High Voltage:,650
+Conversion Gain:,1024
+Coarse Gain:,1
+Fine Gain:,1.73
+Upper Discriminator:,731
+Lower Discriminator:,591
+Calibration Coefficients:Elapsed Real Time:,0.0
+Elapsed Live Time:,0.0
+Start Time:,February 17, 2025, 03:07:58
+End Time:,February 17, 2025, 03:08:39
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
+
+1,36,38,154,12,0,37
+2,96,206,5345,238,2,150
+3,299,300,104,1,0,299
+
+Channel Data:
+Channel,Energy,Counts
+0,,54
+1,,50
+2,,62
+3,,49
+4,,34
+5,,46
+6,,44
+7,,52
+8,,61
+9,,56
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diff --git a/statics/physics/modern-phys-lab/counting/40-2.csv b/statics/physics/modern-phys-lab/counting/40-2.csv
index f530bfa..0f67532 100644
--- a/statics/physics/modern-phys-lab/counting/40-2.csv
+++ b/statics/physics/modern-phys-lab/counting/40-2.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:09:06
-End Time:,February 17, 2025, 03:09:47
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,168,12,0,37
-2,96,206,5336,-215,0,151
-3,299,300,94,-2,0,299
-
-Channel Data:
-Channel,Energy,Counts
-0,,50
-1,,47
-2,,48
-3,,39
-4,,43
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+Spectrum Name:
+Description:
+Student ID:
+Detector Used:
+Comments:
+Acquisition Mode:,MCS Internal
+High Voltage:,650
+Conversion Gain:,1024
+Coarse Gain:,1
+Fine Gain:,1.73
+Upper Discriminator:,731
+Lower Discriminator:,591
+Calibration Coefficients:Elapsed Real Time:,0.0
+Elapsed Live Time:,0.0
+Start Time:,February 17, 2025, 03:09:06
+End Time:,February 17, 2025, 03:09:47
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
+
+1,36,38,168,12,0,37
+2,96,206,5336,-215,0,151
+3,299,300,94,-2,0,299
+
+Channel Data:
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diff --git a/statics/physics/modern-phys-lab/counting/40-3.csv b/statics/physics/modern-phys-lab/counting/40-3.csv
index b751cde..15f5019 100644
--- a/statics/physics/modern-phys-lab/counting/40-3.csv
+++ b/statics/physics/modern-phys-lab/counting/40-3.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:10:14
-End Time:,February 17, 2025, 03:10:55
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,153,2,0,37
-2,96,206,5426,-403,3,151
-3,299,300,89,-3,0,299
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+Spectrum Name:
+Description:
+Student ID:
+Detector Used:
+Comments:
+Acquisition Mode:,MCS Internal
+High Voltage:,650
+Conversion Gain:,1024
+Coarse Gain:,1
+Fine Gain:,1.73
+Upper Discriminator:,731
+Lower Discriminator:,591
+Calibration Coefficients:Elapsed Real Time:,0.0
+Elapsed Live Time:,0.0
+Start Time:,February 17, 2025, 03:10:14
+End Time:,February 17, 2025, 03:10:55
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
+
+1,36,38,153,2,0,37
+2,96,206,5426,-403,3,151
+3,299,300,89,-3,0,299
+
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diff --git a/statics/physics/modern-phys-lab/counting/40-4.csv b/statics/physics/modern-phys-lab/counting/40-4.csv
index e582450..fd658cb 100644
--- a/statics/physics/modern-phys-lab/counting/40-4.csv
+++ b/statics/physics/modern-phys-lab/counting/40-4.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:11:08
-End Time:,February 17, 2025, 03:11:49
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,154,7,0,36
-2,96,206,5490,-61,3,150
-3,299,300,86,-5,0,299
-
-Channel Data:
-Channel,Energy,Counts
-0,,48
-1,,55
-2,,45
-3,,57
-4,,64
-5,,54
-6,,48
-7,,42
-8,,57
-9,,52
-10,,37
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-12,,41
-13,,50
-14,,56
-15,,40
-16,,55
-17,,40
-18,,70
-19,,49
-20,,57
-21,,47
-22,,52
-23,,56
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-25,,54
-26,,50
-27,,33
-28,,35
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-31,,40
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-36,,60
-37,,47
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-40,,52
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+Spectrum Name:
+Description:
+Student ID:
+Detector Used:
+Comments:
+Acquisition Mode:,MCS Internal
+High Voltage:,650
+Conversion Gain:,1024
+Coarse Gain:,1
+Fine Gain:,1.73
+Upper Discriminator:,731
+Lower Discriminator:,591
+Calibration Coefficients:Elapsed Real Time:,0.0
+Elapsed Live Time:,0.0
+Start Time:,February 17, 2025, 03:11:08
+End Time:,February 17, 2025, 03:11:49
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
+
+1,36,38,154,7,0,36
+2,96,206,5490,-61,3,150
+3,299,300,86,-5,0,299
+
+Channel Data:
+Channel,Energy,Counts
+0,,48
+1,,55
+2,,45
+3,,57
+4,,64
+5,,54
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diff --git a/statics/physics/modern-phys-lab/counting/40-5.csv b/statics/physics/modern-phys-lab/counting/40-5.csv
index 6ef2107..17795ed 100644
--- a/statics/physics/modern-phys-lab/counting/40-5.csv
+++ b/statics/physics/modern-phys-lab/counting/40-5.csv
@@ -1,1049 +1,1049 @@
-Spectrum Name:
-Description:
-Student ID:
-Detector Used:
-Comments:
-Acquisition Mode:,MCS Internal
-High Voltage:,650
-Conversion Gain:,1024
-Coarse Gain:,1
-Fine Gain:,1.73
-Upper Discriminator:,731
-Lower Discriminator:,591
-Calibration Coefficients:Elapsed Real Time:,0.0
-Elapsed Live Time:,0.0
-Start Time:,February 17, 2025, 03:12:11
-End Time:,February 17, 2025, 03:12:52
-ROIs:
-ROI:,Low,High,Gross,Net,FWHM,Centroid
-
-1,36,38,168,12,0,36
-2,96,206,5339,509,4,151
-3,299,300,89,2,0,299
-
-Channel Data:
-Channel,Energy,Counts
-0,,59
-1,,56
-2,,49
-3,,52
-4,,56
-5,,42
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-8,,51
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-10,,39
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+Spectrum Name:
+Description:
+Student ID:
+Detector Used:
+Comments:
+Acquisition Mode:,MCS Internal
+High Voltage:,650
+Conversion Gain:,1024
+Coarse Gain:,1
+Fine Gain:,1.73
+Upper Discriminator:,731
+Lower Discriminator:,591
+Calibration Coefficients:Elapsed Real Time:,0.0
+Elapsed Live Time:,0.0
+Start Time:,February 17, 2025, 03:12:11
+End Time:,February 17, 2025, 03:12:52
+ROIs:
+ROI:,Low,High,Gross,Net,FWHM,Centroid
+
+1,36,38,168,12,0,36
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+3,299,300,89,2,0,299
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diff --git a/statics/physics/modern-phys-lab/counting/run.py b/statics/physics/modern-phys-lab/counting/run.py
index 01c816b..3fc2b2d 100644
--- a/statics/physics/modern-phys-lab/counting/run.py
+++ b/statics/physics/modern-phys-lab/counting/run.py
@@ -1,9 +1,10 @@
 import numpy as np
+import matplotlib.pyplot as plt
 
 def read_file(file: str) -> np.typing.ArrayLike:
     with open(f'{file}.csv', 'r') as file:
         lines = file.read().split('Channel,Energy,Counts')[1].strip().split('\n')
-        return np.array([int(line.split(',,')[1]) for line in lines])
+        return np.array([int(line.split(',,')[1]) for line in lines], dtype=np.uint16)
 
 all_data = {
     '200': read_file('200'),
@@ -11,10 +12,44 @@ all_data = {
     '40': sum([read_file(f'40-{i}') for i in range(1, 6)])
 }
 
-for time in all_data:
-    data = all_data[time]
+fig, axs = plt.subplots(len(all_data), sharex='all')
+i = 0
+
+for dwell_time in all_data:
+    print(f'\n==[{dwell_time}ms]==\n')
+    data = all_data[dwell_time]
+
+    N = len(data)
+    print(f'Loaded {sum(data)} events across {N} samples')
 
     mean = np.mean(data)
-    print(f'Found sample mean {mean}')
+    print(f'Found sample mean {mean:0.2f}')
 
-    stdev = np.stdev(mean, ddof=1)
\ No newline at end of file
+    stdev = np.std(data, ddof=1)
+    print(f'Found sample standard deviation {stdev:0.2f}')
+
+    sigma = np.sqrt(mean)
+    print(f'Found sigma {sigma:0.2f}')
+
+    P = 0.6745 * sigma
+    print(f'Found P {P:0.2f}')
+    
+    times_dev_more_than_s = (np.abs(data - mean) > sigma).sum()
+    print(f'Found {times_dev_more_than_s} / {N} ({times_dev_more_than_s / N * 100:0.2f}%) samples deviating from the mean more than sigma {sigma:0.2f}')
+    
+    times_dev_more_than_P = (np.abs(data - mean) > P).sum()
+    print(f'Found {times_dev_more_than_P} / {N} ({times_dev_more_than_P / N * 100:0.2f}%) samples deviating from the mean more than P {P:0.2f}')
+
+    ax = axs[i]
+    i += 1
+
+    ax.set_title(f'Cumulative Average ({dwell_time}ms Dwell time)')
+    ax.set_xlabel('After N Runs')
+    ax.set_ylabel('Cumulative Average')
+
+    sample_num = np.arange(1, N + 1)
+    cumulative_average = np.cumsum(data) / sample_num
+    ax.plot(sample_num, cumulative_average, label=f'Final Value: {cumulative_average[-1]:0.2f}')
+    ax.legend()
+
+plt.show()
\ No newline at end of file
diff --git a/statics/physics/modern-phys-lab/diffraction.py b/statics/physics/modern-phys-lab/diffraction.py
index 42e7a95..6dd4c26 100644
--- a/statics/physics/modern-phys-lab/diffraction.py
+++ b/statics/physics/modern-phys-lab/diffraction.py
@@ -2,17 +2,17 @@ import numpy as np
 import matplotlib.pyplot as plt
 
 # Units: V
-voltages = np.array(np.arange(5000, 2500 - 1, -500)) #-1 to include 2500
+voltages = np.array(np.arange(2500, 5000 + 1, +500)) #+1 to include 5000
 voltages_inv_sqrt = 1 / np.sqrt(voltages)
 
 # New units: m
-diameter_measured_error = 0.02
+diameter_measured_error = 0.002
 
 # Average inner and outer
 # New format: d[0 = small, 1 = large][voltage]
 diameter_measured = np.array([
-    [0.0, 0.024, 0.022, 0.019, 0.02],
-    [0.0, 0.04, 0.0385, 0.036, 0.035]
+    [0.026, 0.0235, 0.024, 0.022, 0.019, 0.02],
+    [0.049, 0.0435, 0.04, 0.0385, 0.036, 0.035]
 ])
 
 diameter_error = 100